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Timer 5 and Timer 9 is not working properly

Hello,
I am just a beginner in embedded programing and thats why I have question in this matter...

I am working on the project (robot controller on stm32f429i board) in which I am using a lot of pwm signals. TIM 1, Tim 3, Tim 4, Tim 8 pwm-outputs are working except of Tim 5 and Tim 9 (Port A1/A2/A3).
I think that it could be problem with USART because it is connected to Port A pins 1 to 4... but I don't know where I could have enable this interface...

Do You have any ideas what should I do? and in which file I can have mistake...?
Regards
Marcin

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