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Bootloader doubts

Hello,
I am working on a USB based bootloader for a LPC 2468. I want to split on chip flash between the bootloader (flash sectors 0-2), while the remaining available would be application code. My problem is that even though I read some of the documentation (linker...), I am not sure how I should address this issue: Do I make new execution regions in my scatter file? Do I use absolute code placement? If somebody could give me a small put to the right direction, that would be great...

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