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How to process raw data from monitor and convert it into set of commands + data exchange?

I have designed a protocol checker. Now I have to "process raw data from monitor to convert transactions recorded at data link layer in to set of command+data exchange at one level higher". But I am unable to figure out what to do and how to do it. Objective of doing this is  "When at soc level the test scenarios are run (in terms of commands), it may assist in debugging at higher level" Can someone brief me on the highlighted ones?