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Program debugged successfully. But Board not responding.

Hello. My Program running Micium's uC-OSII on the Keil MCB2100 board (using the LPC2129
microcontroller).
Debuger: Jlink Seggar.

I can able to build my program in eclipse and debug successfully using Jlink Seggar . But I found the board not responding to the program (Blinking program). Board is woking good because I can able to run some sample programs using uvision Keil.

How do I proceed with this. Is there any setting that I need to check ? please let me know if any way. thank you ,

(
Waiting for J-Link connection...
J-Link is connected.
Firmware: J-Link ARM V8 compiled Feb 8 2012 14:30:39
Hardware: V8.00
S/N: XXXXXX
OEM: J-Link-CE
Listening on TCP/IP port 2331
Waiting for GDB connection...
Connected 127.0.... )