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LPC2129 - IAP failed, now UART not working in user code but ISP works?

Hi all,

I have been developing an SD bootloader for the LPC2129. In testing, I have had a flash fail (this was while developing the CRC check for my SD driver). After that, the board no longer sends text on UART0_putc or UART0_puts. I have tried to reprogram the board using ISP and while it programs and verifies successfully, I can no longer use the UART peripherals.

What did I overwrite, can I recover it (if so, how?), and what can I do to prevent this in the future?

Thanks!